Spinal fluid sampling used to track treatment response in pediatric glioma
Treatment for glioma has long relied on MRI imaging to track tumor markers and treatment response. But findings from a team at the University of Michigan Rogel Cancer Center, led by Carl Koschmann, M.D., pediatric neuro-oncologist at University of Michigan Health C.S. Mott Children’s Hospital and researcher with the Chad Carr Pediatric Brain Tumor Center, suggest a new method could provide additional data about tumor markers before changes appear on an MRI, indicating possible strategies to help clinicians address this aggressive form of cancer. The recent study appeared in Neuro-Oncology.
As part of a phase 1, multi-site clinical trial, Koschmann’s team collected cerebrospinal fluid and plasma from patients with Diffuse Midline Glioma, or DMG, through blood draws and lumbar punctures over many months, collecting hundreds of samples. They wanted to track changes in cell-free tumor DNA as patients received treatment concurrent with the clinical trial.
“We examined DNA floating in the plasma and CSF at various points in treatment and used a very sensitive machine called digital droplet polymerase chain reaction (ddPCR) to assess the fraction, called a variant allele fraction (VAF), of mutated DNA versus non-mutated,” Koschmann said.
A higher VAF indicates more mutant DNA. Koschmann’s team found that patients whose allele fraction went down after receiving the drug in the clinical trial took longer for the tumor to grow larger or relapse, data consistent with the team’s expectations.
But the findings from the CSF also revealed a marker that hadn’t been shown in this kind of study before, one that couldn’t be found relying on MRI imaging alone.
“When the treatment wasn’t working and tumors were growing, as captured on an MRI, that didn’t always correlate with the VAF rising and the tumor DNA getting worse,” said Evan Cantor M.D., first author of the study who performed work at U-M and is now a pediatric neuro-oncology fellow at Washington University. “More often, we saw a spike in the allele fraction in the tumor DNA before the tumor grew, on average about three to four months before.”
Koschmann explains that this is the first study of its kind to collect serial CSF in a clinical trial for any type of glioma. “It is very clear that DNA in the CSF can provide a lot of new information about the state of the tumor,” he said.

